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As suggested by our system programmers there is a way to specify another directory instead of the system /tmp that is probably the default.
In the start.Server.sh script we have added the following:
export IBM_JAVA_OPTIONS="-Djava.io.tmpdir=/specify/path/newdir"
and tried import of settings, it worked and we can see the fileupload* directory under the specified path:
drwxr-xr-x 2 USER GP 8192 Jul 3 09:55 fileupload_6490344366294896865
It would have been nice that after the import this directory to be cancelled.