When I pass the index with these entries it is not working
[rtemanni@ngslogin1 MyProject_20171220_215520]$ bsub < ../run_cgaso_20171220_6242_rerun620.sh
Bad job name. Job not submitted.
I submit the job with bsub < ../run_cgaso_20171220_6242_rerun620.sh
#BSUB -J CGASO-GVCFs[33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,53,54,55,56,57,58,553,554,555,557,558,559,560,561,562,563,564,565,567,569,570,571,
572,573,574,575,576,577,578,1633,1634,1635,1636,1637,1638,1639,1640,1641,1642,1643,1644,1645,1646,1647,1648,1649,1650,1651,1652,1653,1654,1655,1656,1657,1658,17
22,1723,1724,1726,1727,1728,1729,1730,1732,1734,1735,1736,1737,1738,1739,1741,1742,1743,1744,1745,1747,1945,1946,1947,1948,1949,1950,1951,1952,1953,1954,1955,19
56,1957,1958,1959,1960,1961,1962,1963,1964,1965,1966,2000,2008,2041,2044,2047,2065,2066,2095,2162,2292,2297,2298,2301,2302,2303,2304,2305,2306,2307,2308,2309,23
10,2311,2312,2313,2314,2315,2317,2318,2319,2322,2324,2325,2326,2327,2328,2329,2330,2333,2334,2335,2336,2337,2338,2339,2340,2341,2342,2343,2344,2345,2347,2348,23
49,2350,2352,2354,2355,2356,2357,2358,2359,2360,2361,2363,2364,2365,2366,2367,2368,2369,2370,2372,2373,2374,2375,2377,2378,2383,2386,2387,2389,2390,2391,2392,23
93,2394,2395,2396,2397,2398,2399,2400,2401,2402,2403,2404,2405,2406,2407,2408,2410,2411,2412,2413,2414,2416,2418,2419,2420,2477,2478,2479,2480,2481,2482,2483,24
84,2485,2486,2487,2488,2490,2491,2492,2494,2495,2496,2497,2498,2499,2500,2501,2503,2504,2505,2507,2509,2510,2511,2512,2513,2514,2516,2517,2518,2519,2520,2521,25
22,2524,2525,2526,2527,2528,2529,2530,2531,2532,2535,2555,2556,2558,2559,2560,2561,2562,2563,2564,2565,2566,2567,2568,2569,2570,2571,2572,2573,2574,2575,2576,25
80,2588,2589,2590,2591,2592,2593,2594,2595,2597,2598,2599,2600,2601,2602,2603,2604,2605,2606,2607,2608,2609,2612,2614,2615,2617,2618,2621,2622,2623,2626,2627,26
28,2629,2630,2631,2632,2633,2634,2635,2636,2637,2638,2639,2640,2641,2642,2643,2644,2645,2646,2647,2648,2649,2650,2676,2678,2679,2680,2682,2683,2684,2685,2686,26
87,2688,2689,2690,2691,2692,2693,2694,2695,2696,2697,2698,2699,2700,2701,2702,2705,2706,2707,2708,2709,2711,2714,2716,2717,2721,2722,2723,2725,2726,2727,2728,27
29,2731,2732,2733,2734,2735,2736,2737,2738,2739,2740,2741,2742,2743,2744,2745,2746,2747,2748,2749,2750,2751,2752,2753,2754,2755,2756,2757,2758,2759,2760,2761,27
62,2763,2764,2765,2766,2767,2768,2769,2770,2771,2773,2774,2776,2777,2778,2779,2780,2781,2783,2784,2785,2787,2788,2789,2790,2791,2794,2795,2796,2797,2801,2802,28
03,2804,2805,2806,2807,2808,2809,2810,2811,2812,2814,2815,2816,2817,2818,2819,2820,2821,2822,2823,2824,2825,2826,2827,2828,2829,2830,2831,2832,2833,2834,2835,28
37,2838,2839,2840,2841,2842,2843,2846,2847,2848,2849,2850,2851,2852,2853,2854,2855,2857,2858,2859,2860,2861,2862,2863,2864,2865,2866,2867,2868,2869,2870,2881,28
82,2883,2884,2888,2889,2890,2894,2895,2896,2897,2898,2899,2900,2901,2902,2903,2904,2905,2906,2908,2909,2911,2912,2913,2915,2918,2919,2920,2922,2923,2924,2925,29
26,2927,2928,2929,2930,2932,2933,2934,2935,2936,2938,2939,2940,2941,2942,2943,2944,2945,2946,2947,2948,2949,2950,2951,2952,2953,2954,2955,2956,2957,2958,2960,29
62,2963,2964,2965,2966,2968,2970,2972,2973,2974,2975,2976,2978,2979,2980,2981,2982,2984,2985,2986,2987,2988,2989,2990,2991,2992,2993,2994,2995,2996,2997,2998,29
99,3000]
LSF documentation says :
cid:25__=8FBB0889DF9FA84B8f9e8a93df938690918c8FB@
https://www.ibm.com/support/knowledgecenter/en/SSWRJV_10.1.0/lsf_admin/job_arrays_lsf.html
I have to split into 2 array to execute the job and create two separate scripts and submit twice otherwise I got the error message:
Bad job name. Job not submitted.
If in the future I need arrays with 5k or 10K indexes it will be even more fastidious to do the splitting and several submission manually.
A solution needs to be implemented to overcome this limitation.
